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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
MG709397.1 nt Nothoscordum bivalve voucher KL08 t... 576 bp Nothoscordum bivalve QL-PLN-00-007 576 bp View
MG709398.1 nt Eragrostis lugens voucher KL10 tRNA... 616 bp Eragrostis lugens QL-PLN-00-007 616 bp View
MG709399.1 nt Digitaria californica voucher KL11 ... 610 bp Digitaria californica QL-PLN-00-007 610 bp View
MG709400.1 nt Eragrostis secundiflora voucher KL1... 616 bp Eragrostis secundiflora QL-PLN-00-007 616 bp View
MG709402.1 nt Yucca constricta voucher KL15 tRNA-... 574 bp Yucca constricta QL-PLN-00-007 574 bp View
MG709405.1 nt Quercus stellata voucher KL19 tRNA-... 558 bp Quercus stellata QL-PLN-00-007 558 bp View
MG709407.1 nt Setaria scheelei voucher KL21 tRNA-... 615 bp Setaria scheelei QL-PLN-00-007 615 bp View
MG709411.1 nt Verbena halei voucher KL25 tRNA-Leu... 548 bp Verbena halei QL-PLN-00-007 548 bp View
MG709412.1 nt Rhynchosia senna voucher KL26 tRNA-... 593 bp Rhynchosia senna QL-PLN-00-007 593 bp View
MG709416.2 nt Panicum coloratum voucher KL31 tRNA... 614 bp Panicum coloratum QL-PLN-00-007 614 bp View
MG709428.2 nt Panicum virgatum voucher KL43 tRNA-... 614 bp Panicum virgatum QL-PLN-00-007 614 bp View
MG709429.2 nt Dalea nana voucher KL44 tRNA-Leu (t... 606 bp Dalea nana QL-PLN-00-007 606 bp View
MG709431.1 nt Croton texensis voucher KL46 tRNA-L... 616 bp Croton texensis QL-PLN-00-007 616 bp View
MG709438.1 nt Nassella leucotricha voucher KL53 t... 598 bp Nassella leucotricha QL-PLN-00-007 598 bp View
MG709439.1 nt Cenchrus spinifex voucher KL54 tRNA... 612 bp Cenchrus spinifex QL-PLN-00-007 612 bp View
MG709441.1 nt Paspalum setaceum voucher KL56 tRNA... 616 bp Paspalum setaceum QL-PLN-00-007 616 bp View
MG709444.1 nt Eragrostis superba voucher KL59 tRN... 617 bp Eragrostis superba QL-PLN-00-007 617 bp View
MG709446.1 nt Aloysia gratissima voucher KL61 tRN... 564 bp Aloysia gratissima QL-PLN-00-007 564 bp View
MG709450.1 nt Tripsacum dactyloides voucher KL66 ... 527 bp Tripsacum dactyloides QL-PLN-00-007 526 bp View
MG709453.1 nt Festuca octoflora voucher KL70 tRNA... 610 bp Festuca octoflora QL-PLN-00-007 610 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.