Match details
Record ID: |
MG709399.1 |
Database: |
nt |
Go to original record |
Description: |
Digitaria californica voucher KL11 tRNA-Leu (trnL) gene, partial sequence; chloroplast. |
Taxon: |
Digitaria californica |
Original size: |
610 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
1 |
610 |
+ |
610 bp |
|
1 cgaaatcggt agacgctacg gacttgattg tattgagcct tggtatggaa
51 acctgctaag tggtaacttc caaattcaga gaaaccctgg aatgaaaaat
101 gggcaatcct gagccaaatc ccttttttga aaaaacaagc ggttttcaaa
151 ctagaaccca aaggaaaagg ataggtgcag agactcaatg gaagctgttc
201 taacgaatcg aagtaattac gttgtgttgg tagtggaact ccctcaaaat
251 tagaaaaaga agggctttat acatctaata cgtatagata ctgacatagc
301 aaacgattaa tcacaaaacc catatcataa tataggttct ttattttatt
351 ttttaaaatg aaattaggaa tgattatgaa atagaaaatt ctgaattttt
401 ttagaattat tgtgaatcca ttccaatcga atattgagta atcaaatcct
451 tcaattcatt attttcgaga tctttaaaaa agtggattaa tcgaacgagg
501 ataaagagag agtcccattc tacatgtcaa tactgacaac aatgaaattt
551 ctagtaaaag gaaaatccgt cgactttata agtcgtgagg gttcaagtcc
601 ctctatcccc
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.75e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
610 |
591 |
2.75e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.