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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
AB235015.1 nt Cissus repanda chloroplast DNA, trn... 1019 bp Cissus repanda QL-PLN-00-007 582 bp View
AB235016.1 nt Cissus rostrata chloroplast DNA, tr... 1031 bp Cissus rostrata QL-PLN-00-007 586 bp View
AB235017.1 nt Clematicissus striata 7424 chloropl... 1010 bp Clematicissus striata QL-PLN-00-007 592 bp View
AB235018.1 nt Clematicissus striata 7355 chloropl... 1029 bp Clematicissus striata QL-PLN-00-007 592 bp View
AB235020.1 nt Cissus sp. 6873 chloroplast DNA, tr... 1003 bp Cissus sp. 6873 QL-PLN-00-007 587 bp View
AB235024.1 nt Cissus sp. 6903 chloroplast DNA, tr... 1033 bp Cissus sp. 6903 QL-PLN-00-007 599 bp View
AB235025.1 nt Cyphostemma bainesii chloroplast DN... 875 bp Cyphostemma bainesii QL-PLN-00-007 575 bp View
AB235028.1 nt Cyphostemma simulans chloroplast DN... 871 bp Cyphostemma simulans QL-PLN-00-007 576 bp View
AB235029.1 nt Nothocissus spicifera chloroplast D... 993 bp Ampelocissus spicifer QL-PLN-00-007 597 bp View
AB235030.1 nt Parthenocissus henryana chloroplast... 1014 bp Parthenocissus henryana QL-PLN-00-007 592 bp View
AB235038.1 nt Parthenocissus semicordata chloropl... 1023 bp Parthenocissus semicordata QL-PLN-00-007 591 bp View
AB235039.1 nt Parthenocissus semicordata chloropl... 1010 bp Parthenocissus semicordata QL-PLN-00-007 592 bp View
AB235042.1 nt Parthenocissus tricuspidata chlorop... 1026 bp Parthenocissus tricuspidata QL-PLN-00-007 592 bp View
AB235047.1 nt Rhoicissus digitata chloroplast DNA... 1013 bp Rhoicissus digitata QL-PLN-00-007 593 bp View
AB235048.1 nt Rhoicissus rhomboidea chloroplast D... 1032 bp Rhoicissus rhomboidea QL-PLN-00-007 594 bp View
AB235049.1 nt Rhoicissus rhomboidea chloroplast D... 1037 bp Rhoicissus rhomboidea QL-PLN-00-007 594 bp View
AB235050.1 nt Tetrastigma cf. delavayi 7443 chlor... 989 bp Tetrastigma cf. delavayi 7443 QL-PLN-00-007 553 bp View
AB235054.1 nt Tetrastigma laoticum chloroplast DN... 1014 bp Tetrastigma laoticum QL-PLN-00-007 581 bp View
AB235056.1 nt Tetrastigma obtectum chloroplast DN... 1010 bp Tetrastigma obtectum QL-PLN-00-007 579 bp View
AB235071.1 nt Tetrastigma sp. 7465 chloroplast DN... 992 bp Tetrastigma sp. 7465 QL-PLN-00-007 553 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.