Match details
Record ID: |
AB235056.1 |
Database: |
nt |
Go to original record |
Description: |
Tetrastigma obtectum chloroplast DNA, trnL-trnF IGS, isolate: 6522, partial sequence. |
Taxon: |
Tetrastigma obtectum |
Original size: |
1010 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
1 |
579 |
+ |
579 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gattgagcct taatatggaa
51 acctactaag tgataacttt caaattcagg gaaaccctgg aataaaaaat
101 gggcaatcct gagccaaatc ctgttttccg aaaaccagaa aacgctaata
151 aaaaaggata ggtgcagaga ctcaatggaa gctgttctaa caaaaacaaa
201 tggagttgac tatgttacga tgttaaacga atccttccat caaaactcca
251 gaaccagaaa ggatgaagga taaacctata tacataggta ctgaaatatt
301 atatcaaatg attaatgatg gctcgaatct ctatttttta tatgaaaaat
351 gaaagaattg ttgtaaatcg attccaagtt gaagaaagaa aagaatcgaa
401 tattcattga tcaaatcatt cactccatag tccgatagat catttgaaga
451 acagattaat cggacgagaa taaagagaga gtcccattct acatgtcaat
501 atcgacagca atgaaattta tagtaagagg aaaatccgtc gactttaaaa
551 atcgtgaggg ttcaagtccc tctatcccc
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.61e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
579 |
560 |
2.61e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.