Match details
Record ID: |
AB235048.1 |
Database: |
nt |
Go to original record |
Description: |
Rhoicissus rhomboidea chloroplast DNA, trnL-trnF IGS, isolate: 6673, partial sequence. |
Taxon: |
Rhoicissus rhomboidea |
Original size: |
1032 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
1 |
594 |
+ |
594 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gattgagcct taatatggaa
51 acctactaag tgataacttt caaattcagg gaaaccctgg aataaaaaat
101 ggggcaatcc tgagccaaat cctgttttcc gaaaacaacc aagggttcag
151 aaaacgataa taaaaaaaag gataggtgca gagactcaat ggaagctgtt
201 ctaacaaaaa caaatggagt tgactatgtt gcgttgttaa aggaatcctt
251 ctgtcaaaac tccagaacca gaaaggatga aggataaacc tatatacata
301 ggtactgaaa gattatatca aataattaat gacggctcga atctgtattt
351 tttgatatga aaaatgaaag aattattgta aatcgattcc aagttgaaga
401 aagaaaagaa tcgaatattc attgatcaaa tcattcactc catagtccga
451 tagatctttt gaagaactga ttaatcggac gagaataaag atagagtccc
501 attctacatg tcaataccga caacaatgaa atttatagta agaggaaaat
551 ccgtcgactt taaaaatcgt gagggttcaa gtccctctat cccc
View other 1 match with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.68e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
594 |
575 |
2.68e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.