European Commission logo
Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon details

Amplicon:

 594 bp 
1     cgaaatcggt agacgctacg gacttaattg gattgagcct taatatggaa
51    acctactaag tgataacttt caaattcagg gaaaccctgg aataaaaaat
101   ggggcaatcc tgagccaaat cctgttttcc gaaaacaacc aagggttcag
151   aaaacgataa taaaaaaaag gataggtgca gagactcaat ggaagctgtt
201   ctaacaaaaa caaatggagt tgactatgtt gcgttgttaa aggaatcctt
251   ctgtcaaaac tccagaacca gaaaggatga aggataaacc tatatacata
301   ggtactgaaa gattatatca aataattaat gacggctcga atctgtattt
351   tttgatatga aaaatgaaag aattattgta aatcgattcc aagttgaaga
401   aagaaaagaa tcgaatattc attgatcaaa tcattcactc catagtccga
451   tagatctttt gaagaactga ttaatcggac gagaataaag atagagtccc
501   attctacatg tcaataccga caacaatgaa atttatagta agaggaaaat
551   ccgtcgactt taaaaatcgt gagggttcaa gtccctctat cccc

An identical amplicon is found in the following matches:

Record ID Database Record description Record length Taxon Method Amplicon size Match details
AB235049.1 nt Rhoicissus rhomboidea chloroplast D... 1037 bp Rhoicissus rhomboidea QL-PLN-00-007 594 bp View
AB235048.1 nt Rhoicissus rhomboidea chloroplast D... 1032 bp Rhoicissus rhomboidea QL-PLN-00-007 594 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.