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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
JX047838.1 nt Prostanthera teretifolia voucher Jo... 1451 bp Prostanthera teretifolia QL-PLN-00-007 573 bp View
JX047839.1 nt Prostanthera violacea voucher AD 87... 1484 bp Prostanthera violacea QL-PLN-00-007 567 bp View
JX047840.1 nt Prostanthera walteri voucher Conn 5... 1472 bp Prostanthera walteri QL-PLN-00-007 567 bp View
JX047841.1 nt Prostanthera ovalifolia voucher Con... 1493 bp Prostanthera ovalifolia QL-PLN-00-007 567 bp View
JX047842.1 nt Westringia longifolia voucher Hind ... 1499 bp Westringia longifolia QL-PLN-00-007 558 bp View
JX047843.1 nt Westringia lucida voucher Orme 600 ... 1518 bp Westringia lucida QL-PLN-00-007 562 bp View
JX047844.1 nt Wrixonia schultzii voucher Bishop 8... 1433 bp Wrixonia schultzii QL-PLN-00-007 533 bp View
JX047845.1 nt Wrixonia prostantheroides voucher s... 1471 bp Wrixonia prostantheroides QL-PLN-00-007 569 bp View
JX155042.1 nt Chassalia sp. 2 VIET trnT-trnL inte... 934 bp Chassalia sp. 2 VIET QL-PLN-00-007 581 bp View
JX155046.1 nt Margaritopsis kappleri trnT-trnL in... 1670 bp Eumachia kappleri QL-PLN-00-007 590 bp View
JX161551.1 nt Eritrichium nanum voucher populatio... 548 bp Eritrichium nanum QL-PLN-00-007 546 bp View
JX219458.1 nt Erythrostemon gilliesii voucher COR... 1047 bp Erythrostemon gilliesii QL-PLN-00-007 596 bp View
JX219459.1 nt Hoffmannseggia glauca voucher CORD:... 981 bp Hoffmannseggia glauca QL-PLN-00-007 590 bp View
JX219462.1 nt Stenodrepanum bergii voucher CORD:H... 1033 bp Stenodrepanum bergii QL-PLN-00-007 586 bp View
JX235348.1 nt Cryptochloa strictiflora chloroplas... 135033 bp Cryptochloa strictiflora QL-PLN-00-007 613 bp View
JX275893.1 nt Myrocarpus venezuelensis voucher J.... 593 bp Myrocarpus venezuelensis QL-PLN-00-007 590 bp View
JX275901.1 nt Dipteryx magnifica voucher L.P.de Q... 847 bp Dipteryx magnifica QL-PLN-00-007 608 bp View
JX880022.1 nt Origanum vulgare subsp. vulgare chl... 151935 bp Origanum vulgare subsp. vulgare QL-PLN-00-007 544 bp View
KC414276.1 nt Mentha canadensis isolate 511190001... 919 bp Mentha canadensis QL-PLN-00-007 571 bp View
KC414277.1 nt Salvia aerea isolate 511190002 tRNA... 888 bp Salvia aerea QL-PLN-00-007 529 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.