Match details
| Record ID: |
JX155046.1 |
| Database: |
nt |
Go to original record |
| Description: |
Margaritopsis kappleri trnT-trnL intergenic spacer, partial sequence; tRNA-Leu (trnL) gene, complete sequence; and trnL-trnF intergenic spacer, partial sequence; chloroplast. |
| Taxon: |
Eumachia kappleri |
| Original size: |
1670 bp |
View other 20492 matches for this method
| Predicted amplification details: |
| Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
| 0 |
0 |
739 |
1328 |
+ |
590 bp |
|
1 cgaaatcggt agacgctacg gacttaatta gattgggcct tggtatggaa
51 actcgccgag tgagaacttt caaattcaga gaaaccccgg aattaataaa
101 aaggggcaat cctgagccaa atcctgtttt ctgaaagcaa aagttcagaa
151 agtgaaatta aaagggggat aggtgcagag actcaatgga agctgttcta
201 acaaatggag ttggttgcgg tagtagagaa gtctttccat caaaaattca
251 gtaagtataa gtattaagga tggggtgaag gataaacgta tatacgtagt
301 gaatagtata ttaaacgaga aatgacagcc cgaatgaatt tatgtttttc
351 tatgaaaaaa caaagaattg gtttggtgtg aatagattct acgttgaaga
401 aagaatcgaa tattcattga tcaaatgatt gactccatag tctgataaat
451 cttttcaaga actgattaat tggatgagaa taaagataga gtcccattct
501 acatgtcaat gccggcagca atgaaattta tagttaagag gaaaatccgt
551 cgacttttaa aatcgtgagg gttcaagtcc ctctatcccc
| Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
| primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.66e-08 |
| primerB |
100.0 |
20 bp |
0 |
0 |
590 |
571 |
2.66e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.
