Match details
Record ID: |
JX047845.1 |
Database: |
nt |
Go to original record |
Description: |
Wrixonia prostantheroides voucher s.n. trnT-trnL intergenic spacer, partial sequence; tRNA-Leu (trnL) gene, complete sequence; and trnL-trnF intergenic spacer, partial sequence; chloroplast. |
Taxon: |
Wrixonia prostantheroides |
Original size: |
1471 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
610 |
1178 |
+ |
569 bp |
|
1 cgaaatcggt agacgctacg nnnnnnnnnn nnattgagcc ttggtatgga
51 aacctactaa gtgataactt tcaaattcag agaaaccccg gaattaataa
101 aaatgggtaa tcctgagcca aatcccgttt tctcaaaaca aaggtaaagg
151 ttcaaaaaac aaaaaaaaag gataggtgca gagactcaat ggaagctgtt
201 ctaacaaatg gagttgactg ccctggtaga ggcatctttg catggaaact
251 tccgaaagga tgaaggataa atgtatctat tgaatactat atcaaatgat
301 taatgatggt ccgaatctgt atttgtattt tttaatatga aaaatggaag
351 aattggtgtg aattgattcc acattgaaga aaaaatcgaa tattcagtca
401 gcaaatgatt cactccatag tccgatagat cttttaaaga actgattaat
451 cggacgagaa taaagataga gtcccattct acatgtcaat accggcaaca
501 atgaaattta tagtaagagg aaaatccgtc gactttaaaa atcgtgaggg
551 ttcaagtccc tctatcccc
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.56e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
569 |
550 |
2.56e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.