Match details
Record ID: |
KC414276.1 |
Database: |
nt |
Go to original record |
Description: |
Mentha canadensis isolate 511190001 tRNA-Leu (trnL) gene and trnL-trnF intergenic spacer, partial sequence; chloroplast. |
Taxon: |
Mentha canadensis |
Original size: |
919 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
1 |
571 |
+ |
571 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gattgagcct tggtatggaa
51 acttactaag tgataacttt caaattcaga gaaaccccgg aattaataaa
101 aatgggcaat cctgagccaa atcctgtttt cccaaaacaa aggtttcaaa
151 aaacgaaaaa aaaggatagg tgcagagact caatggaagc tgttctaaca
201 aatggagttg actgcgtcgg tagaggaatc tttccatgga aactttattt
251 tataaaggat gaaagataaa cgcacctatt gaatactata tcaaatgatt
301 aatgttggcc cgaatctatt tttttaatat gaaaatgaaa aaatggaaaa
351 atcggtgtga atttttttca cgttgaagaa aaaatagaat attcatcaac
401 tcattcactc cgtagtccga tagatctttt aaagaactta ttaatcggac
451 gagaataaag atagagtccc attctacatg ctacatatca ataccggcaa
501 caatgaaatt tatagtaaga ggaaaatccg tcgactttaa aaatcgtgag
551 ggttcaagtc cctctatccc c
View other 5 matches with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.57e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
571 |
552 |
2.57e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.