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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
JN102179.1 nt Picrasma quassioides isolate P682 t... 1059 bp Picrasma quassioides QL-PLN-00-007 593 bp View
JN161141.1 nt Polygonella basiramia voucher FLAS:... 1006 bp Polygonum basiramium QL-PLN-00-007 606 bp View
JN161142.1 nt Polygonella ciliata voucher FLAS:A.... 1006 bp Polygonum delopyrum QL-PLN-00-007 606 bp View
JN161144.1 nt Dentoceras myriophylla voucher FLAS... 1007 bp Polygonum dentoceras QL-PLN-00-007 612 bp View
JN161145.1 nt Polygonum polygamum voucher FLAS:R.... 1006 bp Polygonum polygamum QL-PLN-00-007 606 bp View
JN161146.1 nt Polygonum polygamum voucher FLAS:C.... 1006 bp Polygonum polygamum QL-PLN-00-007 606 bp View
JN226773.1 nt Hydrangea petiolaris isolate P160 t... 1044 bp Hydrangea petiolaris QL-PLN-00-007 592 bp View
JN226774.1 nt Hydrangea macrophylla f. otaksa iso... 1043 bp Hydrangea macrophylla f. otaksa QL-PLN-00-007 594 bp View
JN226775.1 nt Hydrangea luteovenosa isolate P578 ... 1042 bp Hydrangea luteovenosa QL-PLN-00-007 594 bp View
JN226776.1 nt Hydrangea serrata isolate P173 tRNA... 1045 bp Hydrangea serrata QL-PLN-00-007 594 bp View
JN226777.1 nt Hydrangea serrata f. fertilis isola... 1044 bp Hydrangea serrata f. fertilis QL-PLN-00-007 594 bp View
JN226778.1 nt Hydrangea serrata f. buergeri isola... 1046 bp Hydrangea serrata f. buergeri QL-PLN-00-007 594 bp View
JN226779.1 nt Schizophragma hydrangeoides isolate... 1059 bp Hydrangea hydrangeoides QL-PLN-00-007 594 bp View
JN226780.1 nt Zanthoxylum schinifolium isolate P6... 1083 bp Zanthoxylum schinifolium QL-PLN-00-007 620 bp View
JN226784.1 nt Zanthoxylum ailanthoides isolate P6... 1083 bp Zanthoxylum ailanthoides QL-PLN-00-007 620 bp View
JN563930.1 nt Synthetic construct Nicotiana undul... 160743 bp synthetic construct QL-PLN-00-007 572 bp View
JN591010.1 nt Ligustrum compactum voucher Li 3611... 894 bp Ligustrum compactum QL-PLN-00-007 548 bp View
JN591025.1 nt Ligustrum lindleyi voucher Li 3612 ... 888 bp Ligustrum lindleyi QL-PLN-00-007 548 bp View
JN861109.1 nt Oryza sativa Indica Group cultivar ... 134448 bp Oryza sativa Indica Group QL-PLN-00-007 615 bp View
JN861110.1 nt Oryza sativa Indica Group chloropla... 134459 bp Oryza sativa Indica Group QL-PLN-00-007 615 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.