Match details
Record ID: |
JN161141.1 |
Database: |
nt |
Go to original record |
Description: |
Polygonella basiramia voucher FLAS:A. Cox LWR74, H. Loring tRNA-Leu (trnL) gene, partial sequence; trnL-trnF intergenic spacer, complete sequence; and tRNA-Phe (trnF) gene, partial sequence; chloroplast. |
Taxon: |
Polygonum basiramium |
Original size: |
1006 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
1 |
606 |
+ |
606 bp |
|
1 cgaaatcggt agacgctacg gacttaattg atttgagcct tagtatggaa
51 acctactaag tgagaacttt caaattcaga gaaaccctgg aattaaaaaa
101 atgggcaatc ctgagccaac tccttcttta caaaaggaag aaaacggata
151 ggtgcagaga ctcaatggaa gctgttctaa caaatggagt tgacagtttt
201 gcgttgttat aagaattgtt ccatcgaaat tccaaaaagg atgaagaata
251 aacctagccg catacgtact caaaatctaa agaatactct atttataatt
301 atatcaaaat attcaaatta agtgaaaaaa tattgatgac gaccaaaatc
351 tttattttac gactatgaaa aagtgaaaga attgttgtaa atcgattcca
401 agtttaagaa agaatcgaat attcgttttt tagtcaatta aaacatttat
451 tccccaatcg gatagatctt ttgaaaaccc gacccatcga atgagaatga
501 agatagagtc ccattctacg tgtcaatcct gacaacaatg aaatttagag
551 taagaggaaa atccgtcgac ttttcaaatc gtgagggttc aagtccctct
601 atcccc
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.73e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
606 |
587 |
2.73e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.