Match details
Record ID: |
JN226777.1 |
Database: |
nt |
Go to original record |
Description: |
Hydrangea serrata f. fertilis isolate P579 tRNA-Leu (trnL) gene, partial sequence; trnL-trnF intergenic spacer, complete sequence; and tRNA-Phe (trnF) gene, partial sequence; plastid. |
Taxon: |
Hydrangea serrata f. fertilis |
Original size: |
1044 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
11 |
604 |
+ |
594 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gattgagcct tggtatggaa
51 acctactaag tgataacttt caaattcaga gaaaccctgg aattaatcaa
101 aacgggcaat cctgagccaa atcctgtttt ccgaaaacaa gcaaaagttc
151 agaaagctaa aatcaaaaaa ggataggtgc agagactcaa tggaagctat
201 tctaacaaat ggagttgact gccttgcgtt tgcgttggta gaggaatcct
251 ttcatcgaaa cttcggaaag gatgaagata aacttatata catacgtata
301 cgtacttaaa tttgatatca aatgattaaa gacgacccga atctgtattt
351 tgttatatga aaaaatggaa gaattgttgt aaatcgattc caaattgaag
401 aaagaatcga atattcgttg atcaaatcat tcactccata gtctgataga
451 tctttttttt gaagaactga ttaatcggac gagaataaag atagagtccc
501 attctacatg tcaataccga caacaatgaa atttatagta agaggaaaat
551 ccgtcgactt tagaaatcgt gagggttcaa gtccctctat cccc
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.68e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
594 |
575 |
2.68e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.