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European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
AF430747.1 nt Hoffmannseggia glauca chloroplast t... 991 bp Hoffmannseggia glauca QL-PLN-00-007 590 bp View
AF430748.1 nt Hoffmannseggia humilis chloroplast ... 1025 bp Hoffmannseggia humilis QL-PLN-00-007 590 bp View
AF430749.1 nt Hoffmannseggia microphylla chloropl... 1053 bp Hoffmannseggia microphylla QL-PLN-00-007 592 bp View
AF430750.1 nt Hoffmannseggia miranda chloroplast ... 1040 bp Hoffmannseggia arequipensis QL-PLN-00-007 596 bp View
AF430751.1 nt Hoffmannseggia oxycarpa chloroplast... 936 bp Hoffmannseggia oxycarpa QL-PLN-00-007 590 bp View
AF430752.1 nt Hoffmannseggia peninsularis chlorop... 1053 bp Hoffmannseggia peninsularis QL-PLN-00-007 592 bp View
AF430753.1 nt Hoffmannseggia prostrata chloroplas... 1038 bp Hoffmannseggia prostrata QL-PLN-00-007 590 bp View
AF430754.1 nt Hoffmannseggia repens chloroplast t... 926 bp Hoffmannseggia repens QL-PLN-00-007 590 bp View
AF430755.1 nt Hoffmannseggia tenella chloroplast ... 936 bp Hoffmannseggia tenella QL-PLN-00-007 590 bp View
AF430756.1 nt Hoffmannseggia ternata chloroplast ... 1031 bp Hoffmannseggia ternata QL-PLN-00-007 597 bp View
AF430757.1 nt Pomaria austrotexana chloroplast tR... 1053 bp Pomaria austrotexana QL-PLN-00-007 599 bp View
AF430758.1 nt Pomaria brachycarpa chloroplast tRN... 1066 bp Pomaria brachycarpa QL-PLN-00-007 598 bp View
AF430759.1 nt Pomaria jamesii chloroplast tRNA-Le... 1070 bp Pomaria jamesii QL-PLN-00-007 591 bp View
AF430760.1 nt Pomaria melanosticta chloroplast tR... 1078 bp Pomaria melanosticta QL-PLN-00-007 598 bp View
AF430761.1 nt Balsamocarpon brevifolium chloropla... 1058 bp Balsamocarpon brevifolium QL-PLN-00-007 584 bp View
AF430762.1 nt Batesia floribunda chloroplast tRNA... 1088 bp Batesia floribunda QL-PLN-00-007 593 bp View
AF430763.1 nt Bauhinia congesta chloroplast tRNA-... 1080 bp Bauhinia macranthera var. grayana QL-PLN-00-007 596 bp View
AF430764.1 nt Burkea africana chloroplast tRNA-Le... 1068 bp Burkea africana QL-PLN-00-007 592 bp View
AF430766.1 nt Cenostigma macrophyllum chloroplast... 1065 bp Cenostigma macrophyllum QL-PLN-00-007 591 bp View
AF430767.1 nt Cercidium praecox chloroplast tRNA-... 1066 bp Parkinsonia praecox QL-PLN-00-007 592 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.