Match details
| Record ID: |
AF430757.1 |
| Database: |
nt |
Go to original record |
| Description: |
Pomaria austrotexana chloroplast tRNA-Leu (trnL) gene, partial sequence; trnL-trnF intergenic spacer region, complete sequence; and tRNA-Phe (trnF) gene, partial sequence. |
| Taxon: |
Pomaria austrotexana |
| Original size: |
1053 bp |
View other 20492 matches for this method
| Predicted amplification details: |
| Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
| 0 |
0 |
1 |
599 |
+ |
599 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gattgagcct tggtatggaa
51 acctaccaag tgagaacttt caaattcaga gaaaccctgg aattaacaat
101 gggcaatcct gagccaaatc ctgttttccg aaaaccaaga agagttcaga
151 aagggagaat aaaaaaagga taggtgcaga gactcaacgg aagctgttct
201 aacaaatgga gttgacgaca tttcctttcg ttagtaaagg aatccttcca
251 tcgaaactcc agaaaagaaa ggatcaagga tgaacatata tatacgtata
301 cgtactgaaa tactatttca attgattaga ccagacagac cccaaatctc
351 tattttttta atatttatat gacaaatgaa agatgtgaat agattccaag
401 ttgaagaaag aatcgaatat ttattgatca aatcattcat tccataatag
451 tctgatagat cttttgaaga actgattaat cggacgagaa taaagataga
501 gtcccattct acatgtcaat aacgacaaca atgaaattta tagtaagagg
551 aaaatccgtc gactttagaa atcgtgaggg ttcaagtccc tctatcccc
| Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
| primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.70e-08 |
| primerB |
100.0 |
20 bp |
0 |
0 |
599 |
580 |
2.70e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.
