Match details
Record ID: |
AF430748.1 |
Database: |
nt |
Go to original record |
Description: |
Hoffmannseggia humilis chloroplast tRNA-Leu (trnL) gene, partial sequence; trnL-trnF intergenic spacer region, complete sequence; and tRNA-Phe (trnF) gene, partial sequence. |
Taxon: |
Hoffmannseggia humilis |
Original size: |
1025 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
1 |
590 |
+ |
590 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gattgagcct tggtatggaa
51 acctaccaag tgagaacttt caaattcaga gaaaccctgg aattaacaat
101 gggcaatcct gagccaaatc ctgtttttcg aaaaccaaga agagttcaga
151 aagggaaagg gagaaaagga taggtgcaga gactcaacgg aagctgttct
201 aacaaatgga gttgatgaca tttcgtttcg ttagtaaagg aatccttcca
251 tcgaaactcc agaaaagaaa ggattaagga tgaacatata tacgtactga
301 aatattattt caattgatta caccagacag aacccaaatc cctatttttt
351 aatatttata tgacaaatga aagatatgaa tagattccaa gttgaagaaa
401 gaatcaaata tttattgatc aaatcattca ctccatcata gtctgataga
451 tcttttgaag aactgattaa tcggacgaga ataaagatag agtcccattc
501 tacatgtcaa tatcgacaac aatgaaattt atagtaagag gaaaatccgt
551 cgactttaga aatcgtgagg gttcaagtcc ctctatcccc
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.66e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
590 |
571 |
2.66e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.