Match details
| Record ID: |
AF430758.1 |
| Database: |
nt |
Go to original record |
| Description: |
Pomaria brachycarpa chloroplast tRNA-Leu (trnL) gene, partial sequence; trnL-trnF intergenic spacer region, complete sequence; and tRNA-Phe (trnF) gene, partial sequence. |
| Taxon: |
Pomaria brachycarpa |
| Original size: |
1066 bp |
View other 20492 matches for this method
| Predicted amplification details: |
| Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
| 0 |
0 |
1 |
598 |
+ |
598 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gattgagcct tggtatggaa
51 acctaccaag tgagaacttt caaattcaga gaaaccctgg aattaacaat
101 gggcaatcct gagccaaatc ctgttttccg aaaaccaaga agagttcaga
151 aagggagaat aaaaaaagga taggtgcaga gactcaacgg aagctgttct
201 aacaaatgga gttgacgaca tttcctttcg ttagtaaagg aatccttcca
251 tcgaaactcc agaaaagaaa ggatcaagga tgaacatata tatacgtata
301 cgtactgaaa tactatttca attgattaga ccagacagac cccaaatctc
351 tattttttaa tatttatatg acaaatgaaa gatgtgaata gattccaagt
401 tgaagaaaga atcgaatatt tattgatcaa atcattcatt ccataatagt
451 ctgatagatc ttttgaagaa ctgattaatc ggacgagaat aaagatagag
501 tcccattcca catgtcaata ccgacaacaa tgaaatttat agtaagagga
551 aaatccgtcg actttagaaa tcgtgagggt tcaagtccct ctatcccc
| Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
| primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.69e-08 |
| primerB |
100.0 |
20 bp |
0 |
0 |
598 |
579 |
2.69e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.
