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European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
GU445344.1 nt Cardiocrinum giganteum voucher 3689... 847 bp Cardiocrinum giganteum QL-PLN-00-007 611 bp View
GU445345.1 nt Cardiocrinum giganteum var. yunnane... 847 bp Cardiocrinum giganteum var. yunnanense QL-PLN-00-007 611 bp View
GU445346.1 nt Lilium brownii voucher H. Lam #20 t... 843 bp Lilium brownii QL-PLN-00-007 607 bp View
GU445347.1 nt Lilium formosanum voucher Boufford,... 843 bp Lilium formosanum QL-PLN-00-007 609 bp View
GU592208.1 nt Oryza meridionalis isolate 300118 c... 134551 bp Oryza meridionalis QL-PLN-00-007 615 bp View
GU592209.1 nt Oryza australiensis isolate 300136 ... 134549 bp Oryza australiensis QL-PLN-00-007 615 bp View
GU592210.1 nt Potamophila parviflora chloroplast,... 134551 bp Potamophila parviflora QL-PLN-00-007 615 bp View
GU592211.1 nt Microlaena stipoides chloroplast, p... 134551 bp Microlaena stipoides QL-PLN-00-007 615 bp View
GU594532.1 nt Urochloa mosambicensis tRNA-Leu (tr... 943 bp Urochloa mosambicensis QL-PLN-00-007 618 bp View
GU594533.1 nt Urochloa plantaginea tRNA-Leu (trnL... 906 bp Urochloa plantaginea QL-PLN-00-007 616 bp View
GU594539.1 nt Urochloa platyphylla tRNA-Leu (trnL... 941 bp Urochloa platyphylla QL-PLN-00-007 619 bp View
GU594541.1 nt Urochloa meziana tRNA-Leu (trnL) ge... 905 bp Urochloa meziana QL-PLN-00-007 618 bp View
GU594542.1 nt Urochloa brizantha tRNA-Leu (trnL) ... 941 bp Urochloa brizantha QL-PLN-00-007 619 bp View
GU594543.1 nt Urochloa ruziziensis tRNA-Leu (trnL... 934 bp Urochloa ruziziensis QL-PLN-00-007 610 bp View
GU594544.1 nt Urochloa humidicola tRNA-Leu (trnL)... 916 bp Urochloa humidicola QL-PLN-00-007 618 bp View
GU594545.1 nt Urochloa lorentziana tRNA-Leu (trnL... 931 bp Urochloa lorentziana QL-PLN-00-007 609 bp View
GU594549.1 nt Melinis minutiflora tRNA-Leu (trnL)... 950 bp Melinis minutiflora QL-PLN-00-007 619 bp View
GU594550.1 nt Moorochloa eruciformis tRNA-Leu (tr... 928 bp Moorochloa eruciformis QL-PLN-00-007 620 bp View
GU594551.1 nt Rupichloa decidua tRNA-Leu (trnL) g... 943 bp Rupichloa decidua QL-PLN-00-007 621 bp View
GU594552.1 nt Urochloa paucispicata tRNA-Leu (trn... 940 bp Urochloa paucispicata QL-PLN-00-007 618 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.