Match details
Record ID: |
GU594551.1 |
Database: |
nt |
Go to original record |
Description: |
Rupichloa decidua tRNA-Leu (trnL) gene and trnL-trnF intergenic spacer, partial sequence; chloroplast. |
Taxon: |
Rupichloa decidua |
Original size: |
943 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
2 |
622 |
+ |
621 bp |
|
1 cgaaatcggt agacgctacg gacttgattg tattgagcct tggtatggaa
51 acctgctaag tggtaacttc caaattcaga gaaaccctgg aatgaaaaaa
101 gggcaatcct gagccaaatc ccttttttga aaaaacaagt ggttctcaaa
151 ctagaaccca aaggaaaagg ataggtgcag agactcaatg gaagctgttc
201 taacgaatcg aagtaattac gttgtgttgg tagtggaact ccctcgaaat
251 tatagaaaga agggctttat acatctaata cacacgtata gatactgata
301 tagcaaacga ttaatcacag aacccatatc ataatatagg ttctttattt
351 tatatttttt ttttttagaa tgaaattagg aatgattatg aaatagaaaa
401 ttctgaattt tttgagaatt attgtgaatc cattccaatc gaatattgag
451 taatcaaatc cttcaattca ttgttttgag atctttaaaa aagtggatta
501 atcgaacgag gataaagaga gagtcccatt ctacatgtca atactgacaa
551 caatgaaatt tctagtaaaa ggaaaatccg tcgactttat aagtcgtgag
601 ggttcaagtc cctctatccc c
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.80e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
621 |
602 |
2.80e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.