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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
GQ324436.1 nt Poa media voucher US:Hajkova et al.... 1785 bp Poa media QL-PLN-00-007 611 bp View
GQ324440.1 nt Poa nemoralis voucher BRNU:Hajkova ... 1801 bp Poa nemoralis QL-PLN-00-007 611 bp View
GQ324445.1 nt Poa poiformis voucher CAN:Gillespie... 1812 bp Poa poiformis QL-PLN-00-007 618 bp View
GQ324451.1 nt Poa remota voucher US:Stoneberg PB3... 1802 bp Poa remota QL-PLN-00-007 606 bp View
GQ324452.1 nt Poa remota voucher US:Soreng et al.... 1801 bp Poa remota QL-PLN-00-007 606 bp View
GQ324460.1 nt Poa thessala voucher US:Soreng et a... 1767 bp Poa thessala QL-PLN-00-007 563 bp View
GQ324461.1 nt Poa trichophylla voucher US:Soreng ... 1770 bp Poa trichophylla QL-PLN-00-007 611 bp View
GQ324462.1 nt Poa trivialis voucher US:Soreng 468... 1766 bp Poa trivialis QL-PLN-00-007 619 bp View
GQ324463.1 nt Saxipoa saxicola voucher CAN:Gilles... 1833 bp Saxipoa saxicola QL-PLN-00-007 620 bp View
GQ324465.1 nt Saxipoa saxicola voucher MEL:Walsh ... 1799 bp Saxipoa saxicola QL-PLN-00-007 620 bp View
GQ324466.1 nt Sylvipoa queenslandica voucher CAN:... 1803 bp Sylvipoa queenslandica QL-PLN-00-007 620 bp View
GQ381962.1 nt Babiana attenuata tRNA-Leu (trnL) g... 746 bp Babiana attenuata QL-PLN-00-007 548 bp View
GQ381970.1 nt Babiana curviscapa tRNA-Leu (trnL) ... 550 bp Babiana curviscapa QL-PLN-00-007 549 bp View
GQ381985.1 nt Babiana lineolata tRNA-Leu (trnL) g... 775 bp Babiana lineolata QL-PLN-00-007 549 bp View
GQ382018.1 nt Babiana torta tRNA-Leu (trnL) gene,... 773 bp Babiana torta QL-PLN-00-007 547 bp View
GQ382025.1 nt Babiana villosa tRNA-Leu (trnL) gen... 781 bp Babiana villosa QL-PLN-00-007 549 bp View
GQ395388.1 nt Ficus carica cultivar Kahli 1 tRNA-... 593 bp Ficus carica QL-PLN-00-007 584 bp View
GQ395397.1 nt Ficus carica cultivar Gaa Zir tRNA-... 588 bp Ficus carica QL-PLN-00-007 582 bp View
GQ395401.1 nt Ficus carica cultivar Khadhouri tRN... 594 bp Ficus carica QL-PLN-00-007 586 bp View
GQ395402.1 nt Ficus carica cultivar Khadhri tRNA-... 607 bp Ficus carica QL-PLN-00-007 590 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.