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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
FJ801125.1 nt Bauhinia hildebrandtii voucher Brun... 1053 bp Bauhinia hildebrandtii QL-PLN-00-007 593 bp View
FJ801126.1 nt Bauhinia brevicalyx voucher Bruneau... 1050 bp Bauhinia brevicalyx QL-PLN-00-007 593 bp View
FJ801127.1 nt Bauhinia monandra voucher Bruneau A... 1049 bp Bauhinia monandra QL-PLN-00-007 593 bp View
FJ801129.1 nt Bauhinia podopetala voucher Bruneau... 1049 bp Bauhinia podopetala QL-PLN-00-007 593 bp View
FJ801130.1 nt Bauhinia morondavensis voucher Brun... 1047 bp Bauhinia morondavensis QL-PLN-00-007 593 bp View
FJ801131.1 nt Bauhinia xerophyta voucher Bruneau ... 1048 bp Bauhinia xerophyta QL-PLN-00-007 593 bp View
FJ801132.1 nt Bauhinia grandidieri voucher Brunea... 1049 bp Bauhinia grandidieri QL-PLN-00-007 592 bp View
FJ801133.1 nt Bauhinia sp. CS-2009 voucher Ecklun... 1050 bp Bauhinia sp. CS-2009 QL-PLN-00-007 590 bp View
FJ801134.1 nt Bauhinia mollis voucher Hughes 2402... 1088 bp Bauhinia mollis QL-PLN-00-007 604 bp View
FJ801135.1 nt Bauhinia porosa voucher Andriamihaj... 1049 bp Bauhinia porosa QL-PLN-00-007 593 bp View
FJ801138.1 nt Lasiobema penicilliloba voucher Lar... 1070 bp Phanera penicilliloba QL-PLN-00-007 596 bp View
FJ801142.1 nt Bauhinia taitensis voucher Hucks 25... 1043 bp Bauhinia taitensis QL-PLN-00-007 592 bp View
FJ801143.1 nt Phanera bidentata voucher Stone 126... 1024 bp Phanera bidentata QL-PLN-00-007 606 bp View
FJ801144.1 nt Phanera ornata voucher Larsen 45006... 1084 bp Phanera ornata QL-PLN-00-007 594 bp View
FJ801145.1 nt Tylosema humifusa voucher Carter 69... 1064 bp Tylosema humifusa QL-PLN-00-007 587 bp View
FJ801146.1 nt Tylosema argentea voucher Alstrup 3... 1064 bp Tylosema argentea QL-PLN-00-007 587 bp View
FJ801147.1 nt Bauhinia grevei voucher Du Puy M895... 1049 bp Bauhinia grevei QL-PLN-00-007 593 bp View
FJ801148.1 nt Bauhinia kalantha voucher Luke 9400... 1074 bp Bauhinia kalantha QL-PLN-00-007 592 bp View
FJ801150.1 nt Phanera flexuosa voucher Lewis 1866... 1086 bp none QL-PLN-00-007 590 bp View
FJ801151.1 nt Bauhinia phoenicea voucher Klackenb... 1019 bp Phanera phoenicea QL-PLN-00-007 596 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.