Match details
Record ID: |
FJ801135.1 |
Database: |
nt |
Go to original record |
Description: |
Bauhinia porosa voucher Andriamihajarivo 915 (MO) tRNA-Leu (trnL) gene and trnL-trnF intergenic spacer, partial sequence; plastid. |
Taxon: |
Bauhinia porosa |
Original size: |
1049 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
1 |
593 |
+ |
593 bp |
|
1 cgaaatcggt agacgctacg gacttaatta gattgagcct tggtatggaa
51 acctactaag tgagaacttt caaattcaga gaaaccctgg aattaacaat
101 gggcaatcct gagccaaatc ctgttttccg aaaacaaaga agagttcaaa
151 aagtgagaat aaaaaggata ggtgcagaga ctcaatggaa gctgttctaa
201 caaatggagt tgacgggatt tcgtttcatt agtaaagtaa tccttccatc
251 gaaactccag aaaagaaagg atcaaagata aacgtatata tacatatacg
301 taccgaacta ctatctcaac taaattaatg acgacaccga atctctattt
351 tttaatattt atataagaaa tgaaagatgt aaatcgattc aaagttgagg
401 aaagagtcga atattcattc atcaaatcat tcactccatc ataatccgat
451 agatcttttg aagaaccgat taatcggaca agaataaaga tagagtccca
501 ttctacatgt caatgctgac aacaatgaaa tttatagtaa gaggaaaatc
551 cgtcgacttt aaaaatcgtg agggttcaag tccctctatc ccc
View other 1 match with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.67e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
593 |
574 |
2.67e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.