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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
EF660633.1 nt Taxus wallichiana var. chinensis vo... 890 bp Taxus chinensis QL-PLN-00-007 522 bp View
EF660635.1 nt Taxus baccata voucher 0000381 tRNA-... 899 bp Taxus baccata QL-PLN-00-007 522 bp View
EF660636.1 nt Taxus canadensis voucher 1960-2000 ... 898 bp Taxus canadensis QL-PLN-00-007 522 bp View
EF660637.1 nt Taxus cuspidata voucher JA001 tRNA-... 898 bp Taxus cuspidata QL-PLN-00-007 522 bp View
EF660639.1 nt Taxus x media voucher HL200702 tRNA... 898 bp Taxus x media QL-PLN-00-007 522 bp View
EF660640.1 nt Torreya fargesii voucher WH20070101... 967 bp Torreya fargesii QL-PLN-00-007 536 bp View
EF660641.1 nt Cephalotaxus harringtonia voucher H... 830 bp Cephalotaxus harringtonia QL-PLN-00-007 546 bp View
EF660642.1 nt Torreya taxifolia voucher 20070301 ... 969 bp Torreya taxifolia QL-PLN-00-007 537 bp View
EF660644.1 nt Torreya nucifera voucher 876809 tRN... 967 bp Torreya nucifera QL-PLN-00-007 536 bp View
EF673696.1 nt Photinia serratifolia var. serratif... 603 bp Photinia serratifolia var. serratifolia QL-PLN-00-007 589 bp View
EF673697.1 nt Photinia serratifolia var. daphniph... 610 bp Photinia serratifolia var. daphniphylloides QL-PLN-00-007 596 bp View
EF673698.1 nt Photinia lasiopetala voucher H. L. ... 603 bp Photinia serratifolia var. lasiopetala QL-PLN-00-007 589 bp View
EF673699.1 nt Photinia lucida voucher H. L. Cheng... 604 bp Photinia lucida QL-PLN-00-007 590 bp View
EF673700.1 nt Photinia ardisiifolia voucher H. L.... 604 bp Photinia serratifolia var. ardisiifolia QL-PLN-00-007 590 bp View
EF673701.1 nt Photinia beauverdiana var. notabili... 604 bp Photinia beauverdiana var. beauverdiana QL-PLN-00-007 590 bp View
EF673703.1 nt Photinia niitakayamensis voucher H.... 604 bp Photinia niitakayamensis QL-PLN-00-007 590 bp View
EF676091.1 nt Cephalotaxus griffithii voucher 200... 830 bp Cephalotaxus griffithii QL-PLN-00-007 546 bp View
EF688799.1 nt Tournefortia rubicunda voucher 5384... 985 bp Tournefortia rubicunda QL-PLN-00-007 565 bp View
EF688800.1 nt Myriopus salzmannii voucher 53848 t... 988 bp Myriopus salzmannii QL-PLN-00-007 567 bp View
EF688803.1 nt Euploca campestris voucher 53873 tR... 964 bp Euploca campestris QL-PLN-00-007 522 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.