Match details
Record ID: |
EF688799.1 |
Database: |
nt |
Go to original record |
Description: |
Tournefortia rubicunda voucher 53846 tRNA-Leu (trnL) gene, partial sequence; trnL-trnF intergenic spacer, complete sequence; and tRNA-Phe (trnF) gene, partial sequence; chloroplast. |
Taxon: |
Tournefortia rubicunda |
Original size: |
985 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
2 |
566 |
+ |
565 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gattgagcct tggtatggaa
51 acctactaag tgataacttt caaattcaga gaaaccctgg aattaataaa
101 aatgggcaat cctgagccaa atccggtttt ctgaaaatta agaaaggttc
151 agaaagcgat aaagggatag gtgcagagac tcaatggaag ctgttctaac
201 aaatggggtt gactgtattg gtcgaggaat ctttccaccg aaacttcaga
251 aaggatgaag gataaacata tatatatgta ttccatactc tatcaaatga
301 aatgattaat gacgagccta atcttttttt ttatgaaaaa aggaagagtt
351 ggtgtgaatc gattccacat tgaagaaaga atcgaatatt cattgatcaa
401 accattcact ccatagtctg atagatcttt tgaagaactg attaatcgga
451 cgagaataaa gatagagtcc cgttctacat gtcaataccg gcaacaatga
501 aatttatagt aagaggaaaa tccgtcgact ttaaaaatcg tgagggttca
551 agtccctcta tcccc
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.54e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
565 |
546 |
2.54e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.