Match details
Record ID: |
EF676091.1 |
Database: |
nt |
Go to original record |
Description: |
Cephalotaxus griffithii voucher 200705 tRNA-Leu (trnL) gene, partial sequence; trnL-trnF intergenic spacer, complete sequence; and tRNA-Phe (trnF) gene, partial sequence; chloroplast. |
Taxon: |
Cephalotaxus griffithii |
Original size: |
830 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
1 |
546 |
+ |
546 bp |
|
1 cgaaatcggt agacgctacg gacttaattg aattgagctt aagtatggaa
51 acctactaag tgatagcttc caaatgcagg gaaccctggg atattttgaa
101 tgggcaatcc tgagccaaat ccggtttata gaaacatagt tttctttcct
151 agaaaaggat aggtgcagag actcgacgga agctattcta acgaatgaat
201 atcattttaa tttgatcctg tacactatct acagagtgcc ctctgtattt
251 aaaaatttaa aaagtgatac catccataaa acaaaactaa cgattagaac
301 ttgagtcgtt ctaggctttt tttttttagg agcctacctt cgaagtgaag
351 gtaatgactc attaagtaat ccaattaaaa gcttatttta aaaataaagt
401 gaattcaatt attggaatta atgattggac aaggataaag atagagtcca
451 attctacatg tcattgcaat aacaacaatg caaattgcag taggatgaaa
501 atccgttggt tttataaacc gggagggttc aagtccctct atcccc
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.46e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
546 |
527 |
2.46e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.