Match details
Record ID: EF673697.1
Database:
nt
Go to original record
Description:
Photinia serratifolia var. daphniphylloides voucher H. L. Cheng 013 tRNA-Leu (trnL) gene and trnL-trnF intergenic spacer, partial sequence; chloroplast.
Taxon:
Photinia serratifolia var. daphniphylloides
Original size:
610 bp
View other 20492 matches for this method
Predicted amplification details:
Mismatches
Gaps
From
To
Strand
Amplicon size
0
0
5
600
+
596 bp
1 cgaaatcggt agacgctacg gacttaattg gattgagcct tggtatggaa
51 acctaccaag tgagaacttt caaattcaga gaaaccttgg aattaaaaat
101 gggcaatcct gagccaaatc ctgttttatg aaaataaaca agggtttcat
151 aaaccgaaaa taaaaaagga taggtgcaga gactcaatgg aagctgttct
201 aacaaatgga gttggctgca ttgtgttagt aaaggaatcc ttccatcgaa
251 acttcagaaa ggatgaagga taaacctata tacatacata tagtactgaa
301 atactatctc aaaatgatta atgacgaccc aaatctgtat tttttatatt
351 tatatgaaaa atgaaagact tgttgtgaat cgattaaaaa ttgaaaaaag
401 aatcgaatat tcattgatca aaccattcac tccaccgtag tctgatagat
451 ctttttaata attgattaat cggacgagaa taaagataga gtcccattat
501 acatgttaat atcgacaaca atgaaattta tagtaagagg aaaatccgtc
551 gactttcgaa atcggtagac gctacggttc aagtccctct atcccc
Primers and probe alignment:
Primer/Probe
% Identity
Length
Mismatches
Gaps
From
To
Score
primerA
100.0
20 bp
0
0
1
20
2.68e-08
primerA
100.0
20 bp
0
0
557
576
2.68e-08
primerB
100.0
20 bp
0
0
596
577
2.68e-08
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.
