Match details
Record ID: |
EF660639.1 |
Database: |
nt |
Go to original record |
Description: |
Taxus x media voucher HL200702 tRNA-Leu (trnL) gene, partial sequence; trnL-trnF intergenic spacer, complete sequence; and trnF gene, partial sequence; chloroplast. |
Taxon: |
Taxus x media |
Original size: |
898 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
1 |
522 |
+ |
522 bp |
|
1 cgaaatcggt agacgctacg gacttaatag aattgagcct tggtatggaa
51 acttactaag tgatagcttc caaatacagg ggaaccctgg aatattttga
101 atgggcaatc ctgatccaaa tccgtattat aggaacaata attttatttt
151 ctagaaaagg gataggtgca gagactcaac ggaagatatt ctaacgactt
201 aatatcattt gaatttgaac caatattcta tctacagagt gtagtatgtt
251 attgaaaact ttgaaagtgt tctgtatcat cgttaaaact tgtttcaacg
301 attagaactt gagttgttct aggcttgcct agcttaatga atacttaatt
351 aaagtaattc aattaagaaa taaatagaat ttattccatt tttgaattat
401 tggacgagga taaagataga gtcaaattct acatgtaagt gccaacaaca
451 acaatgcaaa ttgcagtagt cggaaaatcc gttggtttta taaaccgtga
501 gggttcaagt ccctctatcc cc
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.35e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
522 |
503 |
2.35e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.