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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
DQ784646.1 nt Mimosa colombiana voucher G. Davids... 1039 bp Mimosa colombiana QL-PLN-00-007 594 bp View
DQ784648.1 nt Mimosa myriadenia var. dispersa vou... 1069 bp Mimosa myriadena var. dispersa QL-PLN-00-007 594 bp View
DQ784651.1 nt Parapiptadenia pterosperma voucher ... 1090 bp Parapiptadenia pterosperma QL-PLN-00-007 619 bp View
DQ784652.1 nt Parapiptadenia rigida voucher J.M. ... 1094 bp Parapiptadenia rigida QL-PLN-00-007 619 bp View
DQ784653.1 nt Parapiptadenia zehntneri voucher A.... 1094 bp Parapiptadenia zehntneri QL-PLN-00-007 619 bp View
DQ784657.1 nt Piptadenia buchtienii voucher M. Ne... 1084 bp Piptadenia buchtienii QL-PLN-00-007 609 bp View
DQ784658.1 nt Stryphnodendron duckeanum voucher F... 1078 bp Stryphnodendron duckeanum QL-PLN-00-007 609 bp View
DQ784659.1 nt Piptadenia flava voucher G.P. Lewis... 1084 bp Piptadenia flava QL-PLN-00-007 608 bp View
DQ784662.1 nt Piptadenia floribunda voucher S.A. ... 1083 bp Piptadenia floribunda QL-PLN-00-007 608 bp View
DQ784664.1 nt Piptadenia irwinii voucher L.P. de ... 952 bp Piptadenia irwinii QL-PLN-00-007 619 bp View
DQ784665.1 nt Piptadenia leucoxylon voucher A. Fe... 1072 bp Piptadenia leucoxylon QL-PLN-00-007 609 bp View
DQ784668.1 nt Piptadenia paniculata voucher J.G. ... 1070 bp Piptadenia paniculata QL-PLN-00-007 608 bp View
DQ784669.1 nt Piptadenia paniculata voucher W.W. ... 1070 bp Piptadenia paniculata QL-PLN-00-007 609 bp View
DQ784670.1 nt Piptadenia peruviana voucher M. Nee... 1090 bp Piptadenia peruviana QL-PLN-00-007 615 bp View
DQ784675.1 nt Piptadenia stipulacea voucher L.P. ... 1084 bp Piptadenia stipulacea QL-PLN-00-007 609 bp View
DQ784676.1 nt Pseudopiptadenia contorta voucher L... 1067 bp Marlimorimia contorta QL-PLN-00-007 619 bp View
DQ784678.1 nt Stryphnodendron adstringens voucher... 1064 bp Stryphnodendron adstringens QL-PLN-00-007 589 bp View
DQ784679.1 nt Stryphnodendron coriaceum voucher H... 1090 bp Stryphnodendron coriaceum QL-PLN-00-007 609 bp View
DQ784680.1 nt Stryphnodendron fissuratum voucher ... 1089 bp Stryphnodendron fissuratum QL-PLN-00-007 609 bp View
DQ784681.1 nt Stryphnodendron polystachyum vouche... 1087 bp Stryphnodendron polystachyum QL-PLN-00-007 608 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.