Match details
Record ID: |
DQ784665.1 |
Database: |
nt |
Go to original record |
Description: |
Piptadenia leucoxylon voucher A. Fernandez & O. Huber 2909 (NY) tRNA-Leu (trnL) gene, partial sequence; trnL-trnF intergenic spacer, complete sequence; and tRNA-Phe (trnF) gene, partial sequence; chloroplast. |
Taxon: |
Piptadenia leucoxylon |
Original size: |
1072 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
2 |
610 |
+ |
609 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gattgagcct tggtatggaa
51 acctaccaag tgataacttt caaattcaga gaaaccctgg aattaacaat
101 gggcaatcct gagccaaatc ctgttttccg aaaaccaaga agagttcaga
151 aagggagaat aaaaaaagga taggtgcaga gactcaacgg aagctgttct
201 aacaaatgga gttgacgaca tttcgtttcg ttagtaaaga tttcgtttcg
251 ttagtaaaga gatccttcca tcgaaactcc agaaaagaaa ggatcaagga
301 tgagcatacg tatacgtact gaaatactat ttcaattgat tagaccagac
351 agacccaaaa tctatatttt ttaatattta tatgacaaat aaaagatgtg
401 aatcgattct aagttgaaga aagaatcgaa tattaattga tcaaattcac
451 tccatgatag tctgatatat ttttggaaga actgattaat cagacgagaa
501 taaagataga gtcccattct acatgtcaat accgacaaca atgaaattta
551 tagtaagagg aaaatccgtc gactttagaa atcgtgaggg ttcaagtccc
601 tctatcccc
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.74e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
609 |
590 |
2.74e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.