Match details
Record ID: |
DQ784653.1 |
Database: |
nt |
Go to original record |
Description: |
Parapiptadenia zehntneri voucher A.P.S. Gomes et al. 155 (NY) tRNA-Leu (trnL) gene, partial sequence; trnL-trnF intergenic spacer, complete sequence; and tRNA-Phe (trnF) gene, partial sequence; chloroplast. |
Taxon: |
Parapiptadenia zehntneri |
Original size: |
1094 bp |
View other 1 match for this record
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
2 |
620 |
+ |
619 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gattgagcct tggtatggaa
51 acctaccaag tgataacttt caaattcaga gaaaccctgg aattaacaat
101 gggcaatcct gagccaaatc ctgttttccg aaaaccaaga agagttaaga
151 aagggagaat aaaaaaagga taggtgcaga gactcaacgg aagctgttct
201 aacaaatgga gttgacgaca tttcgtttcg ttagtaaaga gatccttcca
251 tcgaaactcc agaaaagaaa ggatcaagga tgagcatacg tatacgtact
301 gaaatactat ttcaattgat tagaccagac agacccaaaa tctctatttt
351 ttaatatgga tatgacaaat aaaagatgtg aatcgattct aagttgaaga
401 aagaatcgaa attaattgat caaattcact ccatgatagt ctgatagatt
451 ttggaagaac tgattaatca gacgagaata aagatagagt cccattctac
501 atgtcaatac cgacaacaat gaaatttata gtaagaggaa aatccgtcga
551 ctttagaaat cgtgagggtt caagtccctc ctatccccaa atcgtgaggg
601 ttcaagtccc tctatcccc
Primers and probe alignment: |
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.79e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
619 |
600 |
2.79e-08 |
primerB |
95.2 |
21 bp |
0 |
1 |
588 |
568 |
1.30e-06 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.