Match details
Record ID: |
DQ784675.1 |
Database: |
nt |
Go to original record |
Description: |
Piptadenia stipulacea voucher L.P. de Queiroz et al. 3115 (NY) tRNA-Leu (trnL) gene, partial sequence; trnL-trnF intergenic spacer, complete sequence; and tRNA-Phe (trnF) gene, partial sequence; chloroplast. |
Taxon: |
Piptadenia stipulacea |
Original size: |
1084 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
2 |
610 |
+ |
609 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gattgagcct tggtatggaa
51 acctaccaag tgataacttt caaattcaga gaaaccctgg aattaacaat
101 gggcaatcct gagccaaatc ctgttttccg aaaaccaaga agagttcaga
151 aagggagaat ataaaaagga taggtgcaga gactcaacgg aagctgttct
201 aacaaatgga gttgacgaca tctcgttttg ttagtaaaga tttcgtttcg
251 ttagtaaaga gatccttcca tcgaaactcc agaaaagaaa ggatcaagga
301 tgagcatacg tatacgtact gaaatactat ttcaattgat tagaccagac
351 agacccaaaa tctctatttt ttaatattta tatgacaaat aaaagatatg
401 aatcgattcc aagttgaaga aagaatcgaa tattaattga tcaaattcac
451 tccatgatag tctgatagat tttttgaaga actgattaat cagatgagaa
501 taaagataga gtcccattct acatgtcaat accgacaaca atgaaattta
551 tagtaagagg aaaatccgtc gactttagaa atcgtgaggg ttcaagtccc
601 tctatcccc
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.74e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
609 |
590 |
2.74e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.