European Commission logo
Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
PP069004.1 nt Lathraea japonica chloroplast, comp... 143840 bp Lathraea japonica QL-PLN-00-007 548 bp View
PP069005.1 nt Melampyrum laxum chloroplast, compl... 143906 bp Melampyrum laxum QL-PLN-00-007 549 bp View
PP072314.1 nt Paspalum vaginatum chloroplast, com... 140483 bp Paspalum vaginatum QL-PLN-00-007 617 bp View
PP073955.1 nt Ajuga reptans chloroplast, complete... 149825 bp Ajuga reptans QL-PLN-00-007 555 bp View
PP078786.1 nt Gardenia jasminoides f. longicarpa ... 154921 bp Gardenia jasminoides f. longicarpa QL-PLN-00-007 550 bp View
PP078788.1 nt Gardenia jasminoides isolate Fujian... 155097 bp Gardenia jasminoides QL-PLN-00-007 550 bp View
PP084944.1 nt Hedyotis uncinella chloroplast, com... 151195 bp Hedyotis uncinella QL-PLN-00-007 567 bp View
PP093763.1 nt Leonotis leonurus chloroplast, comp... 151587 bp Leonotis leonurus QL-PLN-00-007 561 bp View
PP098453.1 nt Cenchrus americanus isolate PI52738... 138170 bp Cenchrus americanus QL-PLN-00-007 613 bp View
PP098454.1 nt Cenchrus americanus isolate PI53706... 138168 bp Cenchrus americanus QL-PLN-00-007 613 bp View
PP098455.1 nt Cenchrus americanus isolate PI52652... 138171 bp Cenchrus americanus QL-PLN-00-007 613 bp View
PP098456.1 nt Cenchrus americanus isolate PI52161... 138171 bp Cenchrus americanus QL-PLN-00-007 613 bp View
PP098457.1 nt Cenchrus americanus isolate PI58702... 138141 bp Cenchrus americanus QL-PLN-00-007 613 bp View
PP098458.1 nt Cenchrus americanus isolate PI25065... 138169 bp Cenchrus americanus QL-PLN-00-007 613 bp View
PP098460.1 nt Cenchrus americanus isolate PI18633... 138187 bp Cenchrus americanus QL-PLN-00-007 613 bp View
PP098461.1 nt Cenchrus americanus isolate Tifleaf... 138108 bp Cenchrus americanus QL-PLN-00-007 613 bp View
PP098463.1 nt Cenchrus purpurascens isolate Liqiu... 138053 bp Cenchrus purpurascens QL-PLN-00-007 613 bp View
PP099869.1 nt Setaria verticillata chloroplast, c... 138946 bp Setaria verticillata QL-PLN-00-007 613 bp View
PP102709.1 nt Penstemon digitalis chloroplast, co... 152993 bp Penstemon digitalis QL-PLN-00-007 572 bp View
PP112995.1 nt Meconopsis torquata chloroplast, co... 153290 bp Meconopsis torquata QL-PLN-00-007 599 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.