Match details
Record ID: |
PP084944.1 |
Database: |
nt |
Go to original record |
Description: |
Hedyotis uncinella chloroplast, complete genome. |
Taxon: |
Hedyotis uncinella |
Original size: |
151195 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
46240 |
46806 |
+ |
567 bp |
|
1 cgaaatcggt agacgctacg gacttaatta taattaaatt gagccttagt
51 gtgggaaacc tactaagtga taactttcaa attcagagaa accccggaat
101 taataaaaat gggcgatcct gatccaaatc ctgttttttc aaatcaaaac
151 aaaggttcaa aaaacgaaat aaaggatagg tgcagagact caatggaagc
201 tgttctaaca aatggagttg actgcgttgg tagaggaatc ctttctacgg
251 aaacttcaga aaggataaag gataaccgta tctatcgaat actatatcaa
301 atgattaatg atggcccgaa tccgtatttt taatatgaaa aatagaagaa
351 ttggtgtgaa ttgattctat attgaagaaa aagtagacta ttcattcatc
401 aaatcattca ctccatagtc cgatagatct tttaaagaac tgattaatcg
451 gacgagaata aagatagagt cccattctac atgtcaatac tggcaacaat
501 gaaatttata gtaagaggaa aatccgtcga ctttcaaaat cgtgagggtt
551 caagtccctc tatcccc
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.55e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
567 |
548 |
2.55e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.