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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
ON684554.1 nt Mentha suaveolens isolate BPTPS159 ... 582 bp Mentha suaveolens QL-PLN-00-007 571 bp View
ON684555.1 nt Mentha aquatica isolate BPTPS160 tR... 581 bp Mentha aquatica QL-PLN-00-007 570 bp View
ON684556.1 nt Mentha x piperita isolate BPTPS169 ... 582 bp Mentha x piperita QL-PLN-00-007 571 bp View
ON684558.1 nt Mentha aquatica isolate BPTPS173 tR... 581 bp Mentha aquatica QL-PLN-00-007 570 bp View
ON684559.1 nt Mentha pulegium isolate BPTPS176 tR... 577 bp Mentha pulegium QL-PLN-00-007 566 bp View
ON684560.1 nt Mentha cervina isolate BPTPS179 tRN... 590 bp Mentha cervina QL-PLN-00-007 579 bp View
ON684562.1 nt Clinopodium menthifolium subsp. asc... 575 bp Clinopodium menthifolium subsp. ascendens QL-PLN-00-007 564 bp View
ON684564.1 nt Mentha pulegium isolate BPTPS194 tR... 581 bp Mentha pulegium QL-PLN-00-007 570 bp View
ON711030.1 nt Vitex trifolia chloroplast, complet... 154472 bp Vitex trifolia QL-PLN-00-007 559 bp View
ON756033.1 nt Meconopsis pseudohorridula chloropl... 153989 bp Meconopsis pseudohorridula QL-PLN-00-007 596 bp View
ON764435.1 nt Amana sp. MW-2022b isolate 1 chloro... 151502 bp Amana sp. MW-2022b QL-PLN-00-007 568 bp View
ON764436.1 nt Amana sp. MW-2022b isolate 2 chloro... 151522 bp Amana sp. MW-2022b QL-PLN-00-007 569 bp View
ON815615.1 nt Betonica officinalis isolate LA2211... 151580 bp Betonica officinalis QL-PLN-00-007 562 bp View
ON815616.1 nt Metastachydium sagittatum isolate J... 151784 bp Phlomoides sagittata QL-PLN-00-007 561 bp View
ON815617.1 nt Metastachydium sagittatum isolate Y... 151751 bp Phlomoides sagittata QL-PLN-00-007 562 bp View
ON815618.1 nt Paraphlomis foliata isolate LA22 vo... 152210 bp Paraphlomis foliata QL-PLN-00-007 563 bp View
ON815619.1 nt Paraphlomis hispida isolate LA266 v... 152210 bp Paraphlomis hispida QL-PLN-00-007 563 bp View
ON815620.1 nt Phlomis herba-venti subsp. pungens ... 151571 bp Phlomis herba-venti subsp. pungens QL-PLN-00-007 562 bp View
ON815621.1 nt Phlomoides adylovii isolate M52 vou... 151760 bp Phlomoides adylovii QL-PLN-00-007 562 bp View
ON815622.1 nt Phlomoides chinghoensis isolate Y7A... 151844 bp Phlomoides chinghoensis QL-PLN-00-007 562 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.