Match details
Record ID: |
ON684559.1 |
Database: |
nt |
Go to original record |
Description: |
Mentha pulegium isolate BPTPS176 tRNA-Leu (trnL) gene, complete sequence; chloroplast. |
Taxon: |
Mentha pulegium |
Original size: |
577 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
11 |
576 |
+ |
566 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gattgagcct tggtatggaa
51 acttactaag tgataacttt caaattcaga gaaaccccgg aattaataaa
101 aatgggcaat cctgagccaa atcctgtttt cccaaaacaa aggttgcaaa
151 aaacgaaaaa aaggataggt gcagagactc aatggaagct gttctaacaa
201 atggagttga ctgcgtcggt agaggaatct ttccatggaa aattttataa
251 aggatgaaaa ataaacgcat ctattgaata ctatatcaaa tgattaatgt
301 tggcccgaat ctattttttt aatatgaaaa tgaaaaaatg gaaaaatcgg
351 tgtgaatttt tttcacgttg aagaaaaaat agaatattca tcaactcatt
401 cactccgtag tccgatagat cttttaaaga acttattaat cggacgagaa
451 taaagataga gtcccattct acatgctaca tatcaatacc ggcaacaatg
501 aaatttatag taagaggaaa atccgtcgac tttaaaaatc gtgagggttc
551 aagtccctct atcccc
View other 2 matches with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.55e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
566 |
547 |
2.55e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.