Match details
Record ID: |
ON815619.1 |
Database: |
nt |
Go to original record |
Description: |
Paraphlomis hispida isolate LA266 voucher KUN plastid, complete genome. |
Taxon: |
Paraphlomis hispida |
Original size: |
152210 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
46860 |
47422 |
+ |
563 bp |
|
1 cgaaatcggt agacgctacg gacttaatta taattaaatt gagccttagt
51 gtgggaaacc cactaagtga taactttcaa attcagagaa accccggaat
101 taataaaaat gggcgatcct gatccaaatc ctgttttttc aaaacaaagg
151 ttcaaaaaac gaaataaagg ataggtgcag agactcaatg gaagctgttc
201 taacaaatgg agttgactgc gttggtagag gaatccttta tacggaaact
251 tcagaaagga tgaaggataa acgtatctat cgaatactat atcaaatgat
301 taatgatggc ccgaatccgt attttttaat atgaaaaata gaagaattgg
351 tgtgaattga ttctatattg aagaaaaaat cgaatattca ttcatcaaat
401 cattcactcc atagtccgat agatctttta aagaactgat taatcggacg
451 agaataaaga tagagtccca ttctacatgt caatactggc aacaatgaaa
501 tttatagtaa gaggaaaatc cgtcgacttt aaaaatcgtg agggttcaag
551 tccctctatc ccc
View other 2 matches with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.53e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
563 |
544 |
2.53e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.