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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
OM804250.1 nt Lycium sp. clone V12L0150 16-23-7-8... 1089 bp Lycium sp. QL-PLN-00-007 571 bp View
OM807060.1 nt Fritillaria unibracteata var. longi... 151118 bp Fritillaria unibracteata var. longinectarea QL-PLN-00-007 607 bp View
OM807061.1 nt Fritillaria unibracteata var. longi... 151075 bp Fritillaria unibracteata var. longinectarea QL-PLN-00-007 607 bp View
OM807062.1 nt Fritillaria unibracteata var. macul... 151076 bp Fritillaria unibracteata var. maculata QL-PLN-00-007 607 bp View
OM807063.1 nt Fritillaria unibracteata chloroplas... 151066 bp Fritillaria unibracteata QL-PLN-00-007 607 bp View
OM808736.1 nt Isodon rubescens isolate F voucher ... 152279 bp Isodon rubescens QL-PLN-00-007 533 bp View
OM809718.1 nt Tetraena hamiensis var. qatarensis ... 106720 bp Tetraena hamiensis var. qatarensis QL-PLN-00-007 532 bp View
OM912812.1 nt Clerodendrum thomsoniae chloroplast... 151053 bp Clerodendrum thomsoniae QL-PLN-00-007 560 bp View
ON009079.1 nt Anthyllis barba-jovis plastid, comp... 151867 bp Anthyllis barba-jovis QL-PLN-00-007 588 bp View
ON055287.1 nt Aster fanjingshanicus chloroplast, ... 153225 bp Aster fanjingshanicus QL-PLN-00-007 531 bp View
ON121984.1 nt Verbascum blattaria chloroplast, co... 153014 bp Verbascum blattaria QL-PLN-00-007 566 bp View
ON121985.1 nt Verbascum chaixii chloroplast, comp... 153495 bp Verbascum chaixii QL-PLN-00-007 565 bp View
ON121986.1 nt Verbascum phoeniceum chloroplast, c... 153273 bp Verbascum phoeniceum QL-PLN-00-007 573 bp View
ON121987.1 nt Verbascum songaricum chloroplast, c... 153291 bp Verbascum songaricum QL-PLN-00-007 567 bp View
ON124917.1 nt Mentha longifolia chloroplast, comp... 152078 bp Mentha longifolia QL-PLN-00-007 578 bp View
ON149877.1 nt Caryopteris forrestii plastid, comp... 151854 bp Caryopteris forrestii QL-PLN-00-007 563 bp View
ON149881.1 nt Verbena officinalis plastid, comple... 153174 bp Verbena officinalis QL-PLN-00-007 553 bp View
ON186542.1 nt Impatiens chlorosepala chloroplast,... 152917 bp Impatiens chlorosepala QL-PLN-00-007 565 bp View
ON209180.1 nt Papaver nudicaule chloroplast, comp... 153822 bp Papaver nudicaule QL-PLN-00-007 596 bp View
ON209181.1 nt Papaver nudicaule chloroplast, comp... 153726 bp Papaver nudicaule QL-PLN-00-007 596 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.