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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
MZ466559.1 nt Tocoyena brevifolia voucher Groger ... 1715 bp Tocoyena brevifolia QL-PLN-00-007 567 bp View
MZ466560.1 nt Tocoyena formosa var. pseudobrasili... 1742 bp Tocoyena formosa var. pseudobrasiliensis QL-PLN-00-007 568 bp View
MZ466561.1 nt Tocoyena formosa voucher Borges 340... 1721 bp Tocoyena formosa QL-PLN-00-007 572 bp View
MZ466562.1 nt Tocoyena brasiliensis voucher Alves... 1735 bp Tocoyena brasiliensis QL-PLN-00-007 567 bp View
MZ466563.1 nt Tocoyena longiflora voucher Aona 22... 1711 bp Tocoyena longiflora QL-PLN-00-007 567 bp View
MZ475341.1 nt Rheum lhasaense chloroplast, comple... 161768 bp Rheum lhasaense QL-PLN-00-007 603 bp View
MZ484959.1 nt Randia calycina voucher Guedes 2449... 1685 bp Randia calycina QL-PLN-00-007 567 bp View
MZ484962.1 nt Tocoyena arenicola voucher Melo 718... 1670 bp Tocoyena arenicola QL-PLN-00-007 573 bp View
MZ484963.1 nt Tocoyena megistantha voucher Prata ... 1716 bp Tocoyena megistantha QL-PLN-00-007 567 bp View
MZ484965.1 nt Tocoyena formosa voucher Roque 4861... 1734 bp Tocoyena formosa QL-PLN-00-007 568 bp View
MZ484966.1 nt Tocoyena bullata voucher Borges 343... 1698 bp Tocoyena bullata QL-PLN-00-007 567 bp View
MZ508423.1 nt Scutellaria baicalensis voucher TKM... 151801 bp Scutellaria baicalensis QL-PLN-00-007 565 bp View
MZ508425.1 nt Rehmannia glutinosa voucher TKMII-4... 153646 bp Rehmannia glutinosa QL-PLN-00-007 563 bp View
MZ555773.1 nt Thunbergia erecta chloroplast, comp... 152202 bp Thunbergia erecta QL-PLN-00-007 533 bp View
MZ568926.1 nt Deschampsia cespitosa chloroplast, ... 135328 bp Deschampsia cespitosa QL-PLN-00-007 613 bp View
MZ573784.1 nt Koenigia campanulata var. fulvida v... 154446 bp Koenigia campanulata var. fulvida QL-PLN-00-007 612 bp View
MZ573786.1 nt Koenigia cyanandra voucher SD428 ch... 155973 bp Koenigia cyanandra QL-PLN-00-007 577 bp View
MZ573793.1 nt Koenigia mollis var. mollis voucher... 158578 bp Koenigia mollis var. mollis QL-PLN-00-007 591 bp View
MZ573794.1 nt Koenigia mollis var. rudis voucher ... 158627 bp Koenigia mollis var. rudis QL-PLN-00-007 591 bp View
MZ618350.1 nt Pteroxygonum denticulatum chloropla... 162928 bp Pteroxygonum denticulatum QL-PLN-00-007 594 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.