JRC GMO-Amplicons | EURL GMFF

Record ID:	MZ466560.1
Database:	nt	Go to original record
Description:	Tocoyena formosa var. pseudobrasiliensis voucher Persson & Gustafsson 346 (GB) trnT-trnL intergenic spacer and tRNA-Leu (trnL) gene, partial sequence; chloroplast.
Taxon:	Tocoyena formosa var. pseudobrasiliensis
Original size:	1742 bp

Method:	QL-PLN-00-007	Go to GMOMETHODS record
		View in JRC GMO-Matrix
Description:	Qualitative PCR method for detection of chloroplast tRNA-Leu intron (ISO/FDIS 21569:2005).
Target:	chloroplast tRNA-Leu (trnL) intron

View other 20492 matches for this method

Predicted amplification details:

Mismatches	Gaps	From	To	Strand	Amplicon size
0	0	789	1356	+	568 bp

Amplicon:

568 bp

1     cgaaatcggt agacgctacg gacttaattg aattgagcct tggtatggaa
51    acccactaag tgataacttt caaattcaga gaaaccctgg aattaataaa
101   aaggggcaaa tcctgagcca aatcccgttt tccgaaacca aaggttcaga
151   aagtgaaaaa aggataggtg cagagactca acggaagctg ttctaacaaa
201   tggagttggc tacgttagta gagaaatctt tccatctaaa attccgaaag
251   gataaagtga aggataaacg tatatatacg tattgaatac tatatcaaat
301   gattaatgac gactcgactg aatctgtatt ttttatatga aaacggaaga
351   attggtgtga atagattcca cattcaagaa ggaatcgaat attcattgat
401   caaatgattc actccatagt ctgatagatc ttttcaagaa ttgattaatc
451   ggacgagaat aaagatagag tcccgttcta catgtcaatg tcggcaacaa
501   tgaaatttat agtaagagga aaatccgtcg actttaaaaa tcgtgagggt
551   tcaagtccct ctatcccc

Primers alignment:

Primer/Probe	% Identity	Length	Mismatches	Gaps	From	To	Score
primerA	100.0	20 bp	0	0	1	20	2.56e-08
primerB	100.0	20 bp	0	0	568	549	2.56e-08

Match details