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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
MZ458129.1 nt Genipa americana voucher Guedes 307... 1700 bp Genipa americana QL-PLN-00-007 584 bp View
MZ458130.1 nt Melanoxerus suavissimus voucher Raz... 1737 bp Melanoxerus suavissimus QL-PLN-00-007 567 bp View
MZ458131.1 nt Randia aculeata voucher Tuberquia 5... 1686 bp Randia aculeata QL-PLN-00-007 570 bp View
MZ458132.1 nt Randia armata voucher Rova 2393 (GB... 1640 bp Randia armata QL-PLN-00-007 567 bp View
MZ458133.1 nt Randia brenesii voucher Tuberquia 5... 1712 bp Randia brenesii QL-PLN-00-007 567 bp View
MZ458134.1 nt Randia calycina voucher Borges 258 ... 1685 bp Randia calycina QL-PLN-00-007 567 bp View
MZ458135.1 nt Randia carlosiana voucher Stahl & K... 1720 bp Randia carlosiana QL-PLN-00-007 565 bp View
MZ458136.1 nt Randia ciliolata voucher Rova 2244 ... 1736 bp Randia ciliolata QL-PLN-00-007 567 bp View
MZ458137.1 nt Randia ferox voucher Assis 259 (HUE... 1728 bp Randia ferox QL-PLN-00-007 567 bp View
MZ458138.1 nt Randia spinifex voucher Rova 2285 (... 1435 bp Randia spinifex QL-PLN-00-007 568 bp View
MZ458139.1 nt Randia truncata voucher Cultivated ... 1726 bp Randia truncata QL-PLN-00-007 567 bp View
MZ458141.1 nt Rosenbergiodendron longiflorum vouc... 1704 bp Rosenbergiodendron longiflorum QL-PLN-00-007 568 bp View
MZ458142.1 nt Randia sp. Gomes 1393 voucher Gomes... 1657 bp Randia sp. Gomes 1393 QL-PLN-00-007 568 bp View
MZ458144.1 nt Randia sp. Guedes 24231 voucher Gue... 1714 bp Randia sp. Guedes 24231 QL-PLN-00-007 567 bp View
MZ458145.1 nt Sphinctanthus microphyllus voucher ... 1601 bp Sphinctanthus microphyllus QL-PLN-00-007 568 bp View
MZ458146.1 nt Sphinctanthus aurantiacus voucher P... 1708 bp Sphinctanthus aurantiacus QL-PLN-00-007 567 bp View
MZ466552.1 nt Tocoyena hispidula voucher Harley 5... 1675 bp Tocoyena hispidula QL-PLN-00-007 565 bp View
MZ466556.1 nt Tocoyena viscidula voucher Guedes 3... 1676 bp Tocoyena viscidula QL-PLN-00-007 566 bp View
MZ466557.1 nt Tocoyena orinocensis voucher Groger... 1711 bp Tocoyena orinocensis QL-PLN-00-007 567 bp View
MZ466558.1 nt Tocoyena williamsii voucher Stahl 3... 1737 bp Tocoyena williamsii QL-PLN-00-007 567 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.