Match details
Record ID: |
MZ458145.1 |
Database: |
nt |
Go to original record |
Description: |
Sphinctanthus microphyllus voucher Persson & Gustafsson 353 (S) trnT-trnL intergenic spacer and tRNA-Leu (trnL) gene, partial sequence; chloroplast. |
Taxon: |
Sphinctanthus microphyllus |
Original size: |
1601 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
786 |
1353 |
+ |
568 bp |
|
1 cgaaatcggt agacgctacg gacttaattg aattgagcct tggtatggaa
51 acccactaag tgataacttt caaattcaga gaaaccctgg aattaataaa
101 aaggggcaat cctgagccaa atcccgtttt ccgaaaccaa aggttcagaa
151 agtgaaaaaa ggataggtgc agagactcaa cggaagctgt tctaacaaat
201 ggagttggct acgttagtag agaaatcttt ccatttaaaa ttccgaaagg
251 ataaagcgaa ggataaacgt atatatacgt attgaatact atatcaaatg
301 attaatgacg actcgactga atctgtattt tttatatgaa aacggaagaa
351 ttggtgtgaa tagattccac attgaagaag gaatcgaata ttcattgatc
401 aaatgattca ctccatagtc tgatagatct tttcaagaat tgattaatcg
451 gacgagaata aagatagagt cccgttctac atgtcaatgt cgggcaacaa
501 tgaaatttat agtaagagga aaatccgtcg actttaaaaa tcgtgagggt
551 tcaagtccct ctatcccc
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.56e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
568 |
549 |
2.56e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.