Match details
Record ID: |
MZ466556.1 |
Database: |
nt |
Go to original record |
Description: |
Tocoyena viscidula voucher Guedes 30820 (ALCB) trnT-trnL intergenic spacer and tRNA-Leu (trnL) gene, partial sequence; chloroplast. |
Taxon: |
Tocoyena viscidula |
Original size: |
1676 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
734 |
1299 |
+ |
566 bp |
|
1 cgaaatcggt agacgctacg gacttaattg aattgagcct tggtatggaa
51 acccactaag tgataacttt caaattcaga gaaaccctgg aattaataaa
101 aaggggcaat cctgagccaa atcccgtttt ccgaaaccaa aggttcagaa
151 agtgaaaaaa ggataggtgc agagactcaa cggaagctgt tctaacaaat
201 ggagttggct acgttagtag agaaatcttt ccatctaaaa ttccgaaagg
251 ataaagtgaa ggataaacgt atatatacgt attgaatact atatcaaatg
301 attaatgacg actcgactga atctgttttt ttatatgaaa acggaagaat
351 tggtgtgaat agattccaca ttgaagaagg aatcgaatat tcattgatca
401 aatgattcac tccatagtct gatagatctt ttcaagaatt gattaatcgg
451 acgagaataa agatagagtc ccgttctaca tgtcaatgtc ggcaacaatg
501 aaatttatag taagaggaaa atccgtcgac tttaaaaatc gtgagggttc
551 aagtccctct atcccc
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.55e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
566 |
547 |
2.55e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.