Match details
Record ID: |
MZ458138.1 |
Database: |
nt |
Go to original record |
Description: |
Randia spinifex voucher Rova 2285 (GB) trnT-trnL intergenic spacer and tRNA-Leu (trnL) gene, partial sequence; chloroplast. |
Taxon: |
Randia spinifex |
Original size: |
1435 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
721 |
1288 |
+ |
568 bp |
|
1 cgaaatcggt agacgctacg gacttaattg aattgagcct tggtatggaa
51 acccactaag tgataacttt caaattcaga gaaaccctgg aattaataaa
101 aagggggcaa tcctgagcca aatcccgttt tccgaaacca aaggttcaga
151 aagtgaaaaa gggataggtg cagagactca acggaagctg ttctaacaaa
201 tggagttggc tgcgttagta gagaaatctt tccatctaaa attccgaaag
251 gataaagtga aggataaacg tatatatacg tattgaatac tatatcaaat
301 gattaatgac gactcgactg aatctgtatt ttttatatga aaacggaaga
351 attggtgtga atagattcca cattgaagaa ggaatcgaat attcattgat
401 caaatgattc actccatagt ctgatagatc ttttcaagaa ttgattaatc
451 ggacgagaat aaagatagag tcccgttcta catgtcaatg tcggcaacaa
501 tgaaatttat agtaagagga aaatccgtcg actttaaaaa tcgtgagggt
551 tcaagtccct ctatcccc
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.56e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
568 |
549 |
2.56e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.