Match details
Record ID: |
MZ458135.1 |
Database: |
nt |
Go to original record |
Description: |
Randia carlosiana voucher Stahl & Knudsen 1056 (S) tRNA-Leu (trnL) gene and trnL-trnF intergenic spacer, partial sequence; chloroplast. |
Taxon: |
Randia carlosiana |
Original size: |
1720 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
769 |
1333 |
+ |
565 bp |
|
1 cgaaatcggt agacgctacg gacttaattg aattgagcct tggtatggaa
51 acccactaag tgataacttt caaattcaga gaaaccctgg aattaataaa
101 aaggggcaat cctgagccaa atcccgtttt ccgaaaccaa aggttcagaa
151 agtgaaaaag gataggtgca gagactcaac ggaagctgtt ctaacaaatg
201 gagttggctg cgttagtaga gaaatctttc catctaaaat tccgaaaggt
251 aaagtgaagg ataaacgtat atatacgtat tgaatactat atcaaatgat
301 taatgacgac tcgactgaat ccgtattttt tatatgaaaa cggaagaatt
351 ggtgtgaata gattccacat tgaagaagga atcgaatatt cattgatcaa
401 atgattcact ccatagtctg atagatcttt tcaagaattg attaatcgga
451 cgagaataaa gatagagtcc cgttttacat gtcaatgtcg gcaacaatga
501 aatttatagt aagaggaaaa tccgtcgact ttaaaaatcg tgagggttca
551 agtccctcta tcccc
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.54e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
565 |
546 |
2.54e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.