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European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
KY972736.1 nt Dryobalanops lanceolata isolate 22-... 2086 bp Dryobalanops lanceolata QL-PLN-00-007 584 bp View
KY972737.1 nt Dryobalanops rappa isolate KASdr1 t... 1881 bp Dryobalanops rappa QL-PLN-00-007 583 bp View
KY972738.1 nt Fumana procumbens isolate JH274 tRN... 1764 bp Fumana procumbens QL-PLN-00-007 562 bp View
KY972739.1 nt Helianthemum obscurum isolate JH275... 1956 bp Helianthemum obscurum QL-PLN-00-007 587 bp View
KY972758.1 nt Leptolaena cuspidata isolate 33154 ... 1959 bp Leptolaena cuspidata QL-PLN-00-007 598 bp View
KY972759.1 nt Leptolaena multiflora isolate 241 t... 1869 bp Leptolaena multiflora QL-PLN-00-007 601 bp View
KY972762.1 nt Pakaraimaea dipterocarpacea isolate... 1881 bp Pakaraimaea dipterocarpacea QL-PLN-00-007 603 bp View
KY972763.1 nt Pakaraimaea dipterocarpacea isolate... 1881 bp Pakaraimaea dipterocarpacea QL-PLN-00-007 603 bp View
KY972770.1 nt Sarcolaena sp. JH-2017 isolate 903 ... 1997 bp Sarcolaena sp. JH-2017 QL-PLN-00-007 598 bp View
KY972771.1 nt Schizolaena sp. JH-2017 isolate 386... 1979 bp Schizolaena sp. JH-2017 QL-PLN-00-007 598 bp View
KY972868.1 nt Vatica sp. JH-2017 isolate RSv1 tRN... 1823 bp Vatica sp. JH-2017 QL-PLN-00-007 580 bp View
KY972872.1 nt Vateria copallifera isolate RSC-126... 2038 bp Vateria copallifera QL-PLN-00-007 588 bp View
KY972873.1 nt Vateria copallifera isolate RSD-216... 2038 bp Vateria copallifera QL-PLN-00-007 587 bp View
KY972876.1 nt Vatica chinensis isolate RSvc1 tRNA... 1822 bp Vatica chinensis QL-PLN-00-007 580 bp View
KY972878.1 nt Vatica coriacea isolate KASvco1 tRN... 1833 bp Vatica coriacea QL-PLN-00-007 580 bp View
KY972879.1 nt Vatica coriacea isolate KASvco2 tRN... 1833 bp Vatica coriacea QL-PLN-00-007 580 bp View
KY972880.1 nt Vatica diospyroides isolate SDDip20... 1813 bp Vatica diospyroides QL-PLN-00-007 582 bp View
KY972881.1 nt Vatica harmandiana isolate 207565 t... 1813 bp Vatica harmandiana QL-PLN-00-007 581 bp View
KY972882.1 nt Vatica dulitensis isolate 11-2884 t... 1831 bp Vatica dulitensis QL-PLN-00-007 581 bp View
KY972883.1 nt Vatica dulitensis isolate 11-2886 t... 1832 bp Vatica dulitensis QL-PLN-00-007 581 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.