Match details
Record ID: |
KY972763.1 |
Database: |
nt |
Go to original record |
Description: |
Pakaraimaea dipterocarpacea isolate 5119 tRNA-Thr (trnT) gene, partial sequence; trnT-trnL intergenic spacer, tRNA-Leu (trnL) gene, and trnL-trnF intergenic spacer, complete sequence; and tRNA-Phe (trnF) gene, partial sequence; plastid. |
Taxon: |
Pakaraimaea dipterocarpacea |
Original size: |
1881 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
858 |
1460 |
+ |
603 bp |
|
1 cgaaatcggt agacgctacg gacttaagtg tattgagcct tggtatggaa
51 acctactaag tgataacttt caaattcaga gaaaccctgg aaaaaaaaaa
101 tgggcaatcc tgagccaaat cctgttttac gagaataaaa aaaggttcaa
151 aaagcaagaa aaaaaatagg ataggtgcag agactcaatg gaagttgttc
201 gaacaaatgg ggttgactgc ttttgcgttg gtaaaagaat acttctatcg
251 aaactccagc aaggataaac atatagaata cgtaatgaaa aactatctca
301 aaaaagacga ctggggcacc tattcttttg atttgtttat aggttatagc
351 aaaaagaatt atatgcaaaa tcaaaagaaa agaatcgttg tgaatcgatt
401 ccaagttgaa gaatagaata ttcattaata aaaccattca ctccatagtc
451 tgataaatct tttgaaaaac ggattaatcg gacgagaata aagatagagt
501 cccgttctac atgtcaatat caataccgac aacaatgaaa tttatagtaa
551 gaggaaaatc cgtcgacttt aaaaatcgtg agggttcaag tccctctatc
601 ccc
View other 1 match with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.72e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
603 |
584 |
2.72e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.