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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
KT597278.1 nt Tetrastigma cf. scariosum PBP-2017 ... 983 bp Tetrastigma cf. scariosum PBP-2017 QL-PLN-00-007 552 bp View
KT750315.1 nt Scaevola platyphylla tRNA-Leu (trnL... 951 bp Scaevola platyphylla QL-PLN-00-007 549 bp View
KT874489.1 nt Helichrysum orientale tRNA-Leu (trn... 930 bp Helichrysum orientale QL-PLN-00-007 521 bp View
KT874490.1 nt Helichrysum amorginum tRNA-Leu (trn... 930 bp Helichrysum amorginum QL-PLN-00-007 521 bp View
KT897736.1 nt Colchicum triphyllum voucher E. Kay... 1020 bp Colchicum triphyllum QL-PLN-00-007 617 bp View
KT897743.1 nt Colchicum sanguicolle voucher E. Ka... 1022 bp Colchicum sanguicolle QL-PLN-00-007 618 bp View
KT897760.1 nt Colchicum triphyllum voucher E. Kay... 1020 bp Colchicum triphyllum QL-PLN-00-007 617 bp View
KT897779.1 nt Colchicum sanguicolle voucher E. Ka... 1023 bp Colchicum sanguicolle QL-PLN-00-007 617 bp View
KT897783.1 nt Colchicum bivonae voucher E. Kaya_C... 992 bp Colchicum bivonae QL-PLN-00-007 580 bp View
KT897823.1 nt Colchicum micranthum voucher E. Kay... 1005 bp Colchicum micranthum QL-PLN-00-007 598 bp View
KT897843.1 nt Colchicum triphyllum voucher E. Kay... 1022 bp Colchicum triphyllum QL-PLN-00-007 617 bp View
KT897860.1 nt Colchicum sanguicolle voucher E. Ka... 1021 bp Colchicum sanguicolle QL-PLN-00-007 617 bp View
KT897873.1 nt Colchicum serpentinum voucher E. Ka... 1020 bp Colchicum serpentinum QL-PLN-00-007 616 bp View
KT907838.1 nt Gentiana piasezkii voucher Favre 30... 807 bp Gentiana piasezkii QL-PLN-00-007 525 bp View
KT983255.1 nt Echinochloa colona chloroplast, com... 139592 bp Echinochloa colona QL-PLN-00-007 621 bp View
KT983256.1 nt Echinochloa crus-galli chloroplast,... 139851 bp Echinochloa crus-galli QL-PLN-00-007 621 bp View
KU199713.1 nt Nicotiana tabacum cultivar TN90 pla... 155992 bp Nicotiana tabacum QL-PLN-00-007 577 bp View
KU230438.1 nt Lilium tsingtauense chloroplast, co... 151983 bp Lilium tsingtauense QL-PLN-00-007 618 bp View
KU291447.1 nt Zea nicaraguensis chloroplast, comp... 140465 bp Zea nicaraguensis QL-PLN-00-007 532 bp View
KU291484.1 nt Themeda sp. Saarela 1833 chloroplas... 138842 bp Themeda sp. Saarela 1833 QL-PLN-00-007 525 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.