Match details
Record ID: |
KU230438.1 |
Database: |
nt |
Go to original record |
Description: |
Lilium tsingtauense chloroplast, complete genome. |
Taxon: |
Lilium tsingtauense |
Original size: |
151983 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
44495 |
45112 |
+ |
618 bp |
|
1 cgaaatcggt agacgctacg gacttgatta aattgagcct tggtatggaa
51 acctgctaag tgataacttc caaattcaga gaaaccccgg aattaaaaat
101 gggcaatcct gagccaaatc tttattttga gaaaaagggt ttaatttata
151 gtttttttaa ttttaatata aaactacaat aaaaaaagat aggtgcagag
201 actcaatgga agttgttcta acgaatgaag ttgattacgt tgcgctggta
251 gccggaattc ttctatcaaa attacagaga ggatgcccgc cctatatacg
301 tatatataca tactgaccat agtaaacgat tgattaatcg cggcccgaat
351 ccattataat atatatatat atatgaaaaa tttaagagtt attgtaaatc
401 tattccatat tccaatcaaa gtttaaggaa gaatcgaata ttcagtgatc
451 aaattattca ttccagagtc tgtatagatc tttttaaaaa ctgattattc
501 ggacgagaat aaagagagag tcccattcta cgtgtcaata ccgacaacaa
551 tgaaatttat agtaaaagga aaatccgtcg actttataag tcgtgagggt
601 tcaagtccct ctatcccc
View other 3 matches with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.78e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
618 |
599 |
2.78e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.