Match details
Record ID: |
KT897779.1 |
Database: |
nt |
Go to original record |
Description: |
Colchicum sanguicolle voucher E. Kaya_C1505 tRNA-Leu (trnL) gene and trnL-trnF intergenic spacer, partial sequence; chloroplast. |
Taxon: |
Colchicum sanguicolle |
Original size: |
1023 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
1 |
617 |
+ |
617 bp |
|
1 cgaaatcggt agacgctacg gacttgatta gattgagcct tggtatggaa
51 acctgctaag tggtaacttc caaattcaga gaaaccctgg aattaaaaat
101 gggcaatcct gagccaaatc tttatgttaa gaaaacaaag gataggtgca
151 gagactcaat ggaagctgtt ctaacaaatg gaattgacgt tgactacgtt
201 gcgttggtag ctggaatccc tctatcgaaa ttacagaaag gatgacccta
251 tatgcgtata tatacatact gacatatcaa acgattaatc acaactcgaa
301 tctggaatcc atattattaa ctataactat atattatagt tattattata
351 gatatatttt tatataaatt tatagattaa ttaagagtta ttataaatat
401 attccagtcg aagttgaagg aagaatcgaa tattcagtat tcagtgatca
451 aatcattcat tccggagtcg gatagatctt ttgaaaaaaa tgattaatcg
501 gacgagaata aagagagagt cctgttctac gtgtcaatac cgacagcaat
551 gaaatttata gtattaggaa aatccgtcga ctttagaaat cgtgagggtt
601 caagtccctc tatcccc
View other 10 matches with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.78e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
617 |
598 |
2.78e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.