Match details
Record ID: |
KT897873.1 |
Database: |
nt |
Go to original record |
Description: |
Colchicum serpentinum voucher E. Kaya_C6001 tRNA-Leu (trnL) gene and trnL-trnF intergenic spacer, partial sequence; chloroplast. |
Taxon: |
Colchicum serpentinum |
Original size: |
1020 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
1 |
616 |
+ |
616 bp |
|
1 cgaaatcggt agacgctacg gacttgatta gattgagcct tggtatggaa
51 acctgctaag tggtaacttc caaattcaga gaaaccctgg aattaaaaat
101 gggcaatcct gagccaaatc tttatgttaa gaaaacaaag gataggtgca
151 gagactcaat ggaagctgtt ctaacaaatg gaattgacgt tgactacgtt
201 gcgttggtag ctggaatccc tctatcgaaa ttacagaaag gatgacccta
251 tatgcgtata tatacatact gacatatcaa acgattaatc acaactcgaa
301 tctggaatcc atattattaa ctataactat atattatagt tattattata
351 gatatatttt tatataaatt tatagattaa ttaagagtta ttataaatat
401 attccagtcg aagttgaagg aagaatcgaa tattcagtat tcagtgatca
451 aatcattcat tccggagtcg gatagatctt ttgaaaaaat gattaatcgg
501 acgagaataa agagagagtc ctgttctacg tgtcaatacc gacagcaatg
551 aaatttatag tattaggaaa atccgtcgac tttagaaatc gtgagggttc
601 aagtccctct atcccc
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.78e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
616 |
597 |
2.78e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.